| Date | Speaker | Title | Manuscript/paper | Slides/abstract |
| 13th May | Alexander Leguizamon-Robayo1, Antonio JIMÉNEZ-PASTOR2, Micro Tribastone3 Max Tschaikowski1, and Andrea Vandin4,5 (1 Aalborg University, Denmark 2 Universidad Politecnica de Madrid, Spain 3 IMT School for Advanced Studies Lucca, Italy 4 Sant Anna School of Advanced Studies, Pisa, Italy 5 DTU Technical University of Denmark) | Approximate Constrained Lumping of Chemical Reaction Networks | Manuscript | |
| 6th May | S. Müller (Univ. of Vienna) | From complex-balanced mass-action systems to binomial differential inclusions | Paper | Abstract Slides |
| 8th April | R. Golnik, P.F. Stadler, T. Gatter (Leipzig Univ.): | Atom Transition Networks and Isotope Labeling Patterns in Large Chemical Reaction Networks | Manuscript | Slides |
| 1st April | Diego Rojas LA LUZ1, Polly Y. Yu2, and Gheorghe Craciun3 arXiv:2412.13367v1 [math.DS] 17 Dec 2024 1Department of Mathematics, University of Wisconsin?Madison 2Department of Mathematics, University of Illinois Urbana-Champaign 3Department of Mathematics and Department of Biomolecular Chemistry, University of Wisconsin?Madison: | Generalized Lotka-Volterra Systems and Complex Balanced Polyexponential Systems | Manuscript | Slides |
| 25th March | Oskar HENRIKSSON (U. Copenhagen), Carlos Améndola (TU Berlin), Jose Israel Rodriguez (U. Wisconsin, Madison), Polly Y. Yu (University of Illinois Urbana-Champaign) | Maximum likelihood estimation of log-affine models using detailed-balanced reaction networks | Manuscript | |
| 18th March | Badal JOSHI (California State University San Marcos) and Tung Nguyen (TAMU) | Bifunctional enzyme action as a source of robustness in biochemical reaction networks: a novel hypergraph approach | Manuscript | Abstract |
| 4th March | Quentin BADOLLE, Ankit Gupta, Mustafa Khammash (ETH) | Unbiased estimation of second-order parameter sensitivities for stochastic reaction networks | Manuscript | Slides |
| 25th February | Mathieu Hemery (INRA) | From mathematical function to Chemical Reaction Network: two mathematical results! | Abstract | Related paper |
| 18th February | G. Argyris (TU Denmark), A. L. Lafuente (TU Denmark), A. L. Robayo (Aalborg University, Denmark), M. Tribastone IMT (Sant’Anna School for Advanced Studies, Pisa and IMT Lucca, Italy), M. TSCHAIKOWSKI (Aalborg University, Denmark), A. VANDIN (TU Denmark) | Minimization of Dynamical Systems over Monoids | Manuscript | Slides |
| Date | Speaker | Title | Manuscript/paper | Slides/abstract |
| 17th December | BAUMGARTNER, L. and Szmolyan, P. (Univ. Wien) | A Multi-Parameter Singular Perturbation Analysis of the Robertson Model | Manuscript | Abstract |
| 10th December | Samay Kothari (IIIT Hyderabad), Jiaxin Jin (University of Louisiana at Lafayette), ABHISHEK Deshpande (IIIT Hyderabad) | Realizations through Weakly Reversible Networks and the Globally Attracting Locus | Manuscript | Slides |
| 3rd December | Lőrinc Márton, Gábor Szederkényi, Katalin M. Hangos (PPKE) | Modelling and control of interconnected CRNs | Paper01 Paper02 | Slides |
| 26th November | Vit PISKOVSKY, Philip Maini (Oxford Univ.): | Turing patterns for multiple interacting species | Three species, first. | Slides |
| 19th November | Marc R. ROUSSEL, T Soares (University of Lethbridge, Department of Chemistry and Biochemistry): | Graph-based, dynamics-preserving reduction of (bio) chemical systems | Paper | Slides |
| 12th November | Murad BANAJI (Oxford), Balázs Boros (Vienna U.), Josef Hofbauer (Vienna U.) | Bifurcations in planar, quadratic mass-action networks with few reactions and low molecularity | Manuscript Bifurcations Oscillations | Slides |
| 5th November | M. A. Vághy, G. SZEDERKÉNYI (PPKE) | Asymptotic stability of delayed complex balanced reaction networks | Manuscript | Slides |
| 29th October | A Duvall, MA Al-Radhawi, DD Jatkar, E Sontag (Northeastern Univ.): | Interplay between Contractivity and Monotonicity for Reaction Networks | Manuscript | Video |
| 22nd October | Tomislav PLESA (Cambridge) | Mapping dynamical systems into chemical reactions | Manuscript | |
| 15th October | Shesha Gopal Marehalli Srinivas, Francesco Avanzini, and Massimiliano Esposito (University of Luxembourg and University of Padova, Italy) | Characterizing the conditions for indefinite growth in open chemical reaction networks | Phys. Rev. E 109, 064153 | Slides Video |
| 8th October | Gheorghe CRACIUN (Univ. Wisconsin), Radek Erban (Univ. Oxford) | Planar chemical reaction systems with algebraic and non-algebraic limit cycles | Manuscript | Slides |
| 24th September | Elisenda Feliu, Oskar HENRIKSSON, Beatriz Pascual-Escudero (Copenhagen) | Dimension and degeneracy of zeros of parametric polynomial systems with applications to reaction networks | Manuscript | Video |
| 17th September | J. García Galofre^{1}, M. Pérez MILLÁN^{2,3}, A. Galarza Rial^{4}, R. Laubenbachers^{5}, A. Dickenstein^{2,3} ( 1 Dept.Math. and Sciences, U. San Andres, Victoria, Argentina, 2 "Luis A. Santaló" Inst. of Math. Investigations, Buenos Aires, 3 Dept. Math., U. Buenos Aires, 4 Dept. of Exact Sciences, U. Buenos Aires, 5 Lab. for Systems Medicine, Dept. of Medicine, U. Florida, Gainesville, FL, USA.) | Beyond Boolean networks, a multi-valued approach | Manuscript | Slides |
| 7th May | Badal JOSHI (Calif. State Univ., San Marcos) | Computation with reaction networks | Manuscript | Slides |
| 30th April | Nicola VASSENA (FU Berlin) | Mass action systems: two criteria for Hopf bifurcation without Hurwitz | Slides | Manuscript |
| 23rd April | Hamid RAHKOOY (MI of Univ. Oxford), H. Byrne, H. Harrington, A. Ovchinnikov, G. Pogudin and P. Soto | Algebraic identifiability of partial differential equation models | Slides | Manuscript |
| 16th April | Kelvin KIPRONO, János Tóth (BME) | Symbolic solution of some kinetic differential equations | Slides | Manuscript |
| 9th April | Francois FAGES, Mathieu Hemery (Inria and Ecole Polytechnique) | Chemical reaction networks as a programming language: Turing-completeness, compiler of real functions into finite CRNs, and absolute functional robustness. | Paper and slides | Preview |
| 2nd April | Dimitri LOUTCHKO (Univ. of Tokyo) | Cramer-Rao bound and absolute sensitivity in chemical reaction networks | Abstract and slides | Manuscript |
| 26nd March | Murad BANAJI (MI of Univ. Oxford), Balázs Boros (Univ. Vienna), Josef Hofbauer (Univ. Vienna) | The inheritance of local bifurcations in mass action networks | Slides | Manuscript |
| 19th March | Jiaxin JIN (OSU), Gheorghe Craciun (WISC), Abhishek Deshpande (IIIT Hyderabad) | The Dimension of the R-Disguised Toric Locus of a Reaction Network | Slides | Paper |
| 5th March | Bo HUANG, Dongming Wang (Beihang Univ.) | Using Symbolic Computation to Analyze Zero-Hopf Bifurcations of Polynomial Differential Systems | Abstract and Slides | Manuscript |
| 27th Feb. | SZEDERKÉNYI Gábor (PPKE) | Modeling traffic flows with reaction networks | Slides | Paper |
| 20th Feb. | O. O. Aybar, M. SENTURK (Piri Reis Univ.) | Implementation of a triangular probabilistic distribution for optimal parametrization of the SEIR model recovery rates with delay | Programs | Chaos 33, 093137 (2023) |
| 13rd Feb. | Nicolette MESHKAT (SCU) | Identifiability and Indistinguishability of Linear Compartmental Models | Slides | |
| 6th Feb. | Josef HOFBAUER (Univ. Vienna) and Balázs Boros (Univ. Vienna) | Mass action systems with many limit cycles |
| Date | Speaker | Title | Manuscript/paper | Slides/abstract |
| 12th Dec. | Hirokazu Komatsu (National Institute of Technology, Toyota College) and Hiroyuki Nakajima (Kindai University) | Stability analysis for single linkage class chemical reaction networks with distributed time delays | ||
| 5th Dec. | Carsten Wiuf (Copenhagen) | Stationary distributions and reaction networks | ||
| 28th Nov. | Orhan Ozgur AYBAR, Ph.D. (Piri Reis University) | Biochemical models of SIR and SIRS: Effects of bilinear incidence rate on infection-free and endemic states | Paper | |
| 21st Nov. | Diego Rojas La Luz, Polly Yu, Gheorghe Craciun | Unveiling Surprising Connections Between the Classical Theory of Reaction Networks and Generalized Lotka-Volterra Systems | ||
| 14th Nov. | Polly Yu (Harvard) | A Spatiotemporal Model of GPCR-G protein Interactions | ||
| 7th Nov. | Murad Banaji (Oxford Univ.), Balázs Boros (Univ. of Vienna), Josef Hofbauer (Univ. of Vienna) | Oscillations in three-reaction quadratic mass-action systems | ||
| 31st Oct. | Enrico Bibbona, Daniele Cappelletti, Paola Siri, Elena Sabbioni, Rebeka SZABÓ, Gábor Lente | Final nanoparticle size distribution under unusual parameter regimes | ||
| 24th Oct. | Hideyuki MIYAHARA (Hokkaido University, Sapporo) | Information geometric bound on general chemical reaction networks | ||
| 17th Oct. | Carsten Conradi and Maya Mincheva | In distributive phosphorylation catalytic constants enable non-trivial dynamics | ||
| 10th Oct. | Tomislav Plesa (Department of Applied Mathematics and Theoretical Physics, University of Cambridge) | Integral feedback in synthetic biology: Negative-equilibrium catastrophe | ||
| 3rd Oct. | Vághy Mihály, Szederkényi Gábor (PPKE) | Exogenous population-level control of gene regulatory networks | ||
| 26th Sept. | Mirco Tribastone and Max Tschaikowski, Luca Cardelli | Formal Lumping of Polynomial Differential Equations through Approximate Equivalences | ||
| 9th May | Bryan S. Hernandez | Deriving analytic positive steady states of biochemical reaction networks with non-trivial independent decompositions | ||
| 2nd May | Mustafa Khammash | Theory and Design of Biomolecular Integral Feedback Controllers | ||
| 25th April | Polly Yu | Global stability of perturbed complex-balanced systems | ||
| 18th April | M. Vághy, I. Otero-Muras, M. Pájaro, G. Szederkényi | Kinetic discretization of the multidimensional PIDE model of gene regulatory networks | ||
| 11th April | Giulia Giordano (Trento) | : Structural stability of biochemical reaction networks | ||
| 4th April | Maya MINCHEVA (Northern Illinois University, Dekalb IL), George Craciun, Casian Pantea, and Polly Yu | Reaction networks with time delays | ||
| 21st March | B. Joshi, N Kaihnsa, TD Nguyen, A. Shiu: (California State University, San Marcos, University of Copenhagen, Texas A&M University, Texas A&M University) | Prevalence of multistationarity and absolute concentration robustness in reaction networks | ||
| 14th March | Chuang Xu (Hawaii) | Structural classification of continuous-time Markov chains with applications | ||
| 7th March | C. Wiuf (Univ. of Copenhagen) | Molecular Machines and the EM algorithm | ||
| 28th Feb. | Carsten Conradi (Hochschule für Technik und Wirtschaft Berlin) | Multistationarity in the Space of Total Concentrations | ||
| 21st Feb. | J. Hofbauer (Vienna Univ.) | The smallest bimolecular mass-action system with a vertical Andronov-Hopf bifurcation | ||
| 14th Feb. | Radek Erban (Univ. of Oxford) | Chemical reaction networks: systematic design, noise control, and limit cycles |
| 13th Dec. | M. VÁGHY, G. Szederkényi (PPKE) | Lyapunov stability of generalized ribosome flow models | ||
| 6th Dec. | D. Lichtblau (Wolfram Research) | Computing Periodicities in Genomic Sequences | ||
| 29th Nov. | Polly Yu (NSF-Simons Center for Mathematical and Statistical Analysis of Biology, Harvard University) | Weakly reversible and deficiency zero realizations: Structural characterization and uniqueness | ||
| 22nd Nov. | Abhishek Deshpande (IIIT-Hyderabad) | Source-only realizations, weakly reversible deficiency one networks, and dynamical equivalence. | ||
| 15th Nov. | Telek Máté László (Copenhagen Univ.) | (Dis)connectivity of the parameter region of multistationarity in reaction networks | ||
| 8th Nov. | Casian Pantea (West Virginia University) | Multistationarity of mass action networks with one-dimensional stoichiometric subspace | ||
| 1st Nov. | M. A. Al-Radhawi (Northeastern University, Boston), D. Angeli (Imperial College London and University of Florence), and E. D. Sontag (Northeastern University and Harvard Medical School, Boston) | A computational framework for a Lyapunov-enabled analysis of biochemical reaction networks. | ||
| 25th Oct. | V. Gáspár (ELTE), J. Tóth (BUTE) | Reaction extent | ||
| 18th Oct. | Boldog Péter (Szeged, Bolyai Inst.) | Exact lattice-based stochastic cell culture simulation algorithms | ||
| 4th Oct. | Péter Polcz, Balázs Csutak, Gábor Szederkényi (PPKE) | Reconstruction of epidemiological data using nonlinear control | ||
| 27th Sept. | Balázs Boros (Vienna Univ.) | (Part II): The smallest bimolecular mass-action reaction networks admitting Andronov-Hopf bifurcation | Slides | |
| 20th Sept. | Murad Banaji (Middlesex Univ., London) | (Part I): The smallest bimolecular mass-action reaction networks admitting Andronov-Hopf bifurcation | ||
| 13th Sept. | Xiaoxian Tang (Beihang Univ., Beijing), K. Wang | Hopf Bifurcations of Reaction Networks with Zero-One Stoichiometric Coefficients | Slides |
2022.12.13: Mihály Vághy, Gábor Szederkényi (Pázmány P. Catholic Univ., Budapest): Lyapunov stability of generalized ribosome flow models
2022.12.06: Daniel Lichtblau (Wolfram Research): Estimating genomic periodicities
2022.11.29: Polly Yu (NSF-Simons Center for Mathematical and Statistical Analysis of Biology, Harvard University): Weakly reversible and deficiency zero realizations: Structural characterization and uniqueness
2022.11.22: Abhishek Deshpande (IIIT-Hyderabad): Source-only realizations, weakly reversible deficiency one networks, and dynamical equivalence
2022.11.15: Telek Máté László (Copenhagen Univ.): (Dis)connectivity of the parameter region of multistationarity in reaction networks
2022.11.08:Casian Pantea (West Virginia University): Multistationarity of mass action networks with one-dimensional stoichiometric subspace
2022.11.01: M. A. Al-Radhawi (Northeastern University, Boston, MA): A computational framework for a Lyapunov-enabled analysis of biochemical reaction networks
2022.10.25: V. Gáspár (ELTE), J. Tóth (BME): Reaction extent
2022.10.18: Boldog Péter (Szeged, Hungary, Bolyai Inst.): Exact lattice-based stochastic cell culture simulation algorithms incorporating spontaneous and contact-dependent reactions
2022.09.20-27.: Murad Banaji, Balázs Boros: The smallest bimolecular mass-action reaction networks admitting Andronov-Hopf bifurcation
2022.09.13.: Xiaoxian Tang, K Wang: Hopf Bifurcations of Reaction Networks with Zero-One Stoichiometric Coefficients
2022.05.31.: Daniele Cappelletti (Politecnico di Torino): Stochastic reaction networks in stochastic environment
2022.05.10.: Gheorghe Craciun (University of Wisconsin-Madison): Autocatalytic recombination systems: A reaction network perspective
2022.05.03.: Polly Yu (Harvard): Complex-balanced systems in disguise
2022.04.26.: Miruna-Stefana Sorea (SISSA, Trieste, Italy, and Research Center for Mathematics and its Applications at Lucian Blaga University, Sibiu, Romania): Disguised Toric Dynamical Systems
2022.04.12.: Gheorghe Craciun (University of Wisconsin-Madison): Graphical sufficient conditions on multistationarity of open mass-action networks
2022.04.05.: Casian Pantea (West Virginia Univ.): Kinetic discretization of one-dimensional nonlocal flow models
2022.03.29.: Vághy Mihály András (Pázmány Péter Catholic University): Analyzing Steady States of Mass Action Systems through Network Splitting
2022.03.22.: Matthew Johnston (Lawrence Technological University): Lyapunov Functions and Limit Cycles in Some Biochemical Models
2022.03.08.: Valery Romanovsky (Univ. Maribor): Which enlargements of a reaction network preserve its capacity for nontrivial behaviors?
2022.03.01.: Murad Banaji (Middlesex University London): Deterministic approximation for the nucleation growth type model of nanoparticle formation: comparison with stochastic results
2022.02.22.: Szabó Rebeka (PTE): Deterministic approximation for the nucleation growth type model of nanoparticle formation: comparison with stochastic results (FRK)
2022.02.15.: Polcz Péter (PPKE): Computational analysis of nonlinear uncertain systems (FRK)
2022.02.08.: Josef Hofbauer: Limit cycles in three species biomolecular competitive mass-action systems (FRK)
2022.01.25.: Boros Balázs: Limit cycles in mass-preserving three species mass-action systems (FRK)
2022.01.11.: Gábor Szederkényi: Persistence and stability of kinetic compartmental models with bounded capacities (FRK)
2021
2021.06.03.: Nagy Tibor: Investigating novel strategies for parameter optimization on a methanol/NOx combustion mechanism (FRK)
2021.05.20.: Vajda Sándor (Boston Univ.): The N34S mutation of SPINK1 may impact the kinetics of trypsinogen activation to cause early trypsin release in the pancreas (FRK)
2021.05.13.: Valery Romanovsky (CAMTP - Univ. Maribor): Qualitative Studies of Some Biochemical Models (FRK)
2021.05.06.: Michael Freitas Gustavo (Center of Molecular Modeling, Ghent University): Reparameterization of Computational Chemistry Force Fields Using Globally Managed Parallel Optimization (FRK)
2021.04.29.: Drexler Dániel (ÓE): Application of model-based therapy generation in cancer research (FRK)
2021.04.22.: Koncz Viktória (Dept. Phys. BUTE): Adaptive moving mesh algorithm based on local reaction rate (FRK)
2021.04.15.: Vajda Sándor (Boston Univ.): The N34S mutation of SPINK1 may impact the kinetics of trypsinogen activation to cause early trypsin release in the pancreas (FRK)
2021.03.18.: Lente Gábor (PTE): Kinetikai görbék és a Taylor-tétel (FRK)
2021.03.11.: Nagy Tibor (ELKH Anyag- és Környezetkémiai Intézet): Cikkismertetés "Gheorghe Craciun, Jiaxin Jin, Polly Y. Yu: Uniqueness of weakly reversible and deficiency zero realization." https://arxiv.org/abs/2010.04316 , azaz: Gyengén reverzibilis és nulla deficienciájú reakcióhálózatok egyértelműsége (FRK
2021.03.04.: Boros Balázs (Vienna Univ.): Dynamics of planar deficiency-one mass-action systems (FRK)
2021.02.25.: Szabó Rebeka: Nanorészecske-képződési kinetika szimbolikus determinisztikus és szimulációs sztochasztikus leírása (FRK)
2021.02.18.: Csányi Gábor: Machine learning in chemical reaction space (FRK)
2021.02.11.: Tóth János: Neuronhálózatok implementálása reakciókkal (FRK)
2021.02.04.: Szederkényi Gábor: Nonlinear model predictive control with logic constraints for COVID-19 management (FRK)
2019
2019.09.19.: Vilmos Gáspár: KenFest - Symposium in Honor of Kenneth Showalter (Morgantown, WV, May 17, 2019), Tóth János: Mass conservation; decomposition of overall reactions, strictly positive concentrations (FRK)
2019.05.02.: Stevan Maćešić (Department of Physical Chemistry and Materials Science, University of Szeged and University of Belgrade, Faculty of Physical Chemistry): Stoichiometric Network Analysis as tool for stability analysis of the models of complex reaction systems (FRK)
2019.05.02.: Michael Gustavo (BUTE): A case study on the kinetic modelling of an enzyme catalysed kinetic resolution and each models' predictability (FRK)
2019.04.25.: Gáspár Vilmos, Dynamical "quorum sensing" in a complex electrochemical system (FRK)
2019.04.25.: Gábor Szederkényi, co-authors: Mihály Vághy, Gergely Szlobodnyik, Reaction network realization of nonnegative delayed dynamical models (FRK)
2019.04.23.: Lente Gábor, Nucleation-growth type kinetic models of nanoparticle formation: ordinary and partial differential equations (FRK)
2019.04.11.: Tibor Nagy, János Tóth, Tamás Ladics, Automatic kinetic model selection based on concentration vs. time curves (FRK)
2019.03.28.:
Horváth Dezső, Pótári Gábor, Tóth Ágota (Szegedi Tudományegyetem): Precipitation patterns driven by a gravity current (FRK)
Árendás Péter (ELTE TTK): Theory of spectroscopic networks (FRK)
2019.03.07.: Fábri Csaba: Application of quantum-graph theory to the quantum mechanics of extremely floppy molecules (FRK)
2019.02.28.: Szlobodnyik Gergely, Szederkényi Gábor: Reachability analysis of discrete state reaction networks with conservation laws (FRK)
2018
2018.11.13.: Karsai János: The impact of vaccination on the spread of varicella in Hungary (FRK, MMA)
2018.10.09.: Gáspár Vilmos: Delayed Feedback Induced Multirhythmicity - Experiments and Models (FRK)
Earlier talks (from 2018) can be found in this file, slides of earlier presentations can be here.
A korábbi előadások fóliái elérhetők itt.